Soft Condensed Matter Group

Date	Time	Title	Speaker	Notes
23/01/2021	15:30	The Effect of Thyroid Hormone in the Viscoelastic Behavior of Red Blood Cell using Optical Tweezers	Shaqayeq Laktarash Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
16/01/2021	15:30	Analysis and simulation of cell migration using VCM software	Sajad Sadeghizadeh Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
09/01/2021	15:30	Emergence of collective changes in active matter from fluctuations of individual agents	Ali Tahaei Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
02/01/2021	15:30	In silico exploration of novel protease inhibitors against coronavirus 2019 (COVID-19)	Elham Aghaee Drug Design in Silico Lab Department of Chemistry University of Tehran	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
26/12/2020	15:30	Elucidating the Roles of Interleukin I Receptor type II (lL-1Rll) in the Regulation of Human Immune System, Atomistic Molecular Dynamics simulations	Narges Jamshidi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
19/12/2020	15:30	Molecular Dynamics Simulation of Nanocar Motion on Carbon Structures	S. Mahsa Mofidi Institute for Nanoscience and Nanotechnology Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/12/2020	15:30	Mathematical model of plasma-therapy effect on bacterial growth focusing on glycolysis pathway	Samira Ranjbar Department of Physics Arak University and PLASMANT Group of University of Antwerp, Belgium	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
05/12/2020	15:30			Cancelled
28/11/2020	15:30	Conformational transition of SARS-CoV-2 RBD protein from the down state to the up state	Hoda Taeb Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
21/11/2020	15:30	A molecular dynamics approach to study the thermal conductivity of amyloid beta in organic surface	Neda Rafieiolhosseini Institute for Research in Fundamental Sciences (IPM) School of Nano Science	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
14/11/2020	15:30	Statistical Mechanics of Circular DNAs	Zahra Ahmadian Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
07/11/2020	15:30	Information theoretic measures of tactile decisions in the rat somatosensory cortex	Mohammadreza Soltanipour International School for Advanced Studies (SISSA) Trieste, Italy	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
31/10/2020	15:30	A Study of Membrane Fluctuations Using the Virtual Cell Model	Ali Farnudi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
24/10/2020	18:30	Engineering collective behavior in stem cell-driven tissues	Tiam Heydari School of Biomedical Engineering University of British Columbia	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
17/10/2020	15:30			Holiday
10/10/2020	15:30	Social distancing in pedestrian dynamics and its effect on disease spreading	Alireza Hashemi Sina Sajjadi Physics Department Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
03/10/2020	15:30	Reconciliation of controversial death pattern of starved cells	Hamid Seyed-Allaei Technical University of Munich, Germany	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
26/09/2020	15:30			Cancelled
19/09/2020	15:30	A review of Surface Rolling of Molecular Machines and Their Potential Application Investigation	Mehran Vaezi Institute for Nanoscience and Nanotechnology Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/09/2020	15:30	Dynamics of polymers with time-dependent activity	Ehsan Irani The Berlin Institute for Medical Systems Biology (BIMSB) Max Delbrück Center for Molecular Medicine Berlin, Germany	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
05/09/2020	15:30	Genetic Engineering of Biophysics in Plants	Hossein Askari Life Sciences and Biotechnology Department Shahid Beheshti University	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
29/08/2020	15:30			Holiday
22/08/2020	15:30			Cancelled
15/08/2020	15:30	Computational Models for Active Matter	Abbas Najmabadi Physics Department Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
08/08/2020	15:30			Holiday
01/08/2020	15:30	Multi-defect Dynamics in Active Nematics	Alireza Hashemi Physics Department Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/07/2020	15:30	Solar Tracking: The Biology and The Pathways	Mobina Toosian Physics Department Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
18/07/2020	15:30	Buckling properties of the linear chain of particles	Ali Irannezhad Trinity College Dublin Ireland	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/07/2020	15:30			Cancelled
04/07/2020	15:30	Anomalous diffusion and coherent motion of chromosome domains	Hossein Salari Laboratory of Biology and Modelling of the Cell ENS de Lyon France	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
27/06/2020	15:30	Mobility of Surface-Moving Nanocars, How Surface Ripples and Chassis Rigidity Contribute	S. Mahsa Mofidi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
20/06/2020	15:30	Interaction and Dynamics of Topological Defects in Active and Inactive Nematic Environment	Mohammad Reza Ejtehadi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
13/06/2020	15:30	Polarization of Drug Molecules upon Membrane Translocation	Najla Hosseini Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
06/06/2020	15:30			Cancelled
30/05/2020	15:30	The effect of Plasma radicals on Cystine transportation by xC− antiporter	Maryam Ghasemitarei Physics Department of Shahid Beheshti University-Iran PLASMANT group of University of Antwerp-Belgium	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
23/05/2020	15:30			cancelled
16/05/2020	15:30	Elucidating the roles of lL-1Rll in the regulation of human immune system	Narges Jamshidi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
09/05/2020	15:30	A lattice Model for Simulating the Dynamics of Randomly Branching Double-folded Ring Polymers	Elham Ghobadpour Grenoble Alpes University- France	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
02/05/2020	15:30	Design and Development of Electrochemical Biosensors Based on Two-dimensional (2D) Materials	Saba Ranjbar Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/04/2020	15:30	Glycosylated SARS-COV-2 infusion into human cells; biological prospect and structural dynamics	Maryam Azimzadeh Irani Faculty of Life Sciences and Biotechnology Shahid Beheshti University	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
18/04/2020	15:30	Modeling Thermal Fluctuations of a Thin Shell	Ali Farnudi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/04/2020	15:30	Journal Club: Thermodynamics and Structure of Poly[n]catenane Melts	Zahra Ahmadian Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
22/02/2020	15:30			cancelled
15/02/2020	15:30	Mobility of Surface-Moving Nanocars	S. Mahsa Mofidi Department of Physics Sharif University of Technology
01/02/2020	15:30	Lipidated Proteins: Occurrence, Mechanisms, Biological Functions, and Enabling Technologies	Shadi Rahnama Department of Physics Sharif University of Technology
25/01/2020	15:30	How do Sunflowers Follow the Sun?	Mobina Toosian Department of Physics Sharif University of Technology
18/01/2020	15:30	@numba.jit() The MAGIC SPELL	Mohammad Fazelzadeh Department of Physics Sharif University of Technology
04/01/2020	15:30	Collective Nonparametric Density and Spectral Density Estimation with Applications in Bioinformatics	Mehdi Maadooliat Marquette University – USA
28/12/2019	15:30	Force density relation in mesenchymal cell motility	Setareh Dolati
21/12/2019	16:45	A study on the process of passive uptake of nanoparticles by coarse-grained MD simulation	Hoda SHirzad Department of Physics, Sharif University of Technology
21/12/2019	15:30	Putting the mitotic spindle in its place	Ehssan Nazockdast University of North California
14/12/2019	18:30	Studying the wisdom of the crowd through large-scale experiment & statistical simulations	Mahdi Nasiri Department of Physics, Sharif University of Technology	Master thesis defense Room 626, 6th floor of the Physics Department
14/12/2019	15:30	Thermodynamically consistent treatment of the dynamics of the endocytic machinery	Fowad Motahari Physics Department, Washington University in St. Louis
30/11/2019	15:30	Molecular Dynamics Simulation of Nanocar Motion on Carbon Structures	Mahsa Mofidi Institute for Nanosciences and Nanotechnology Sharif University of Technology	cancelled
26/10/2019	15:30	Analysis and simulation of cell migration using VCM software	Sajjad Sadeghizadeh Department of Physics, Sharif University of Technology
05/10/2019	15:30	Mobility induced phases in self-propelled active matter	Ali Tahaei Department of Physics, Sharif University of Technology
22/09/2019	15	Temporal Correlations on Co-infection	Sina Sajjadi Department of Physics, Sharif University of Technology	Master thesis defense
13/08/2019	15:30	Dynamics of active Nematics	Mohammad Fazelzadeh Department of Physics, Sharif University of Technology	Master thesis defense
10/08/2019	15:30	Statistical mechanics of poly[n] catenens	Zahra Ahmadian Physics department Sharif University of Technology
27/07/2019	15:30	Interactions of Azurin with Nanosheets for Medical Applications	Maryam Atabay Sharif University of Technology, Institute of Water and Energy
12/06/2019	15:30	The guanidinium binding role in the single loop conformational dynamics and interaction between two loops of guanidine-II riboswitch	Anahita Khammari Tarbiat Modares University, Biophysics Department
08/006/2019	15:30	Overview of chapter 6 of the book 'Nuclear Architecture and Dynamics' titled : A Polymer Physics View on Universal and Sequence- Specific Aspects of Chromosome Folding. Published 2018. Link to the chapter	Ali Farnudi Department of Physics, Sharif University of Technology	The authors of this chapter are Daniel Jost (Universite ́ Grenoble Alpes), Angelo Rosa (SISSA), Ce ́dric Vaillant (Universite ́ Claude Bernard Lyon), and Ralf Everaers (ENS-Lyon). The chapter reviews physical models that try to explain chromatin foldings and structure resulting in topologically assigned domains inside the nucleus.
01/06/2019	15:30	Dynamics of active Nematics	Mohammad Fazelzadeh Department of Physics, Sharif University of Technology
25/05/2019	15:30	Apoptosis	Narges Jamshidi Department of Physics, Sharif University of Technology
04/05/2019	15:30	Dynamics of active filaments in porous media	Elham Mokhtari University of Göttingen
20/04/2019	15:30	GAG Positioning on IL-1RI; a Mechanism Regulated by Dual Effect of Glycosylation	Maryam Azimzadeh Irani Department of Physics, Sharif University of Technology
13/04/2019	15:30	A brief review of some membrane shaping mechanisms	Hoda Shirzad Department of Physics, Sharif University of Technology
06/04/2019	15:30	Physics of information sharing in prosocial behaviors	Mahdi Nasiri Department of Physics, Sharif University of Technology
02/03/2019	15:30	Self-assembly of protein nano-cages inside vesicles	Shadi Rahnama Department of Physics, Sharif University of Technology
01/19/2019	15:30	Mechanistic Understanding of the Interactions of Nanoparticles and α-synuclein	Najla Hosseini Department of Physics, Sharif University of Technology
01/05/2019	15:30	Auditory event-related ﬁelds emerging from the network structure of the auditory cortex	Aida Hajizadeh Leibniz Institute for Neurobiology, Magdeburg, Germany
01/05/2019	13:30	Chromatin arrangement within the cell nucleus	Ali Farnudi Department of Physics, Sharif University of Technology
12/01/2018	15:30	Studying Coupled Dynamics on Temporal Networks	Sina Sajjadi Department of Physics, Sharif University of Technology
10/20/2018	15:30	GAG Positioning on IL-1RI; a Mechanism Regulated by Dual Effects of Surface Charge and Glycosylation	Maryam Azimzadeh Irani Department of Physics, Sharif University of Technology
10/13/2018	15:30	Structural and Electrical Properties of Confined Water	Iman Ahmadabadi Department of Physics, Sharif University of Technology
10/06/2018	15:30	Theory and applications of acoustophoresis phenomenon in microchannels	Elnaz Attar Jannesar Department of Physics, K.N. Toosi University of Technology
09/29/2018	16:25	Microscopy as a Tool to Unveil Intracellular Super-Resolved Structure in Biological Systems	Nafiseh Rafiei Institute of Biomaterials and Biomedical Engineering University of Toronto
09/29/2018	15:30	To be in equilibrium, or not to be, that is the question	Maziar Heidari Max Planck Institute for Polymer Research, Mainz, Germany
09/22/2018	16:25	Inter-chromosomal hubs and disruption of chromatin organization in mouse model of Autism Spectrum Disorder (ASD)-linked 16p11.2 CNV	Ehsan Irani Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany
09/22/2018	15:30	Discontinuous shear-thinning in adhesive dispersions	Ehsan Irani Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany
09/15/2018	15:30	Defects structure in nematic shell with Oblate ellipsoidal core	Mohammad Hossein Jamshidi Sharif University of Technology	Master's thesis defense
09/08/2018	15:30	MDAS: A new algorithm for equilibration of dense fluids	Arman Fathizadeh The University of Texas at Austin
09/01/2018	15:30	Computational Study of Structure and Function of Calcium Channels and Ion Barriers	Azadeh Alavizargar Institute for Research in Fundamental Sciences (IPM)
08/18/2018	15:30	Defect dynamics in active nematics	Mohammad Fazelzadeh Sharif University of Technology
08/04/2018	15:30	Role of Glycosylation in Developing Anti-cancer Therapeutics	Maryam Azimzadeh Irani Nanyang Technological University
06/09/2018	15:30	A short report of the research activity during my visit from Abdus Salam International Centre for Theoretical Physics	Neda Rafiee Institute for Research in Fundamental Sciences (IPM)
06/02/2018	15:30	Some interesting studies about RNA	Anahita khammari Tarbiat Modares University
05/26/2018	15:30	-	-	no seminar
05/19/2018	15:30	Hydrodynamics Fluctuations	Masoud Mohammadi Sharif University of Technology
05/12/2018	15:30	From the Slipping to the Folding	Ali Irannezhad & Fatemeh Zahraei Qom University
05/05/2018	15:30	Molecular Rheology: How the Force Balance Gives a Constitutive Equation	Abbas Sheikh Amirkabir University of Technology
04/28/2018	15:30	Self-assembly of Supramolecular Chiral Structures: Molecular Dynamics Simulations	Alireza Dastan Sheffield Hallam University

Recent News

Congratulations to Zahra

Maryam Azimzadeh published in the “Journal of Biomolecular Structure and Dynamics”

Anahita’s paper on Scientific Reports

Group Seminars