Recent News

Iman has published in the “Phys. Rev. Materials”

Interesting physics of molecular scale confinement of water is appear on the APS journal of the "Phys. Rev. Materials". The ...
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Alireza has published in the “Soft Materials”

Alireza Hashemi's results on chaotic dynamics of active defects is appear on the journal of "Soft Material" ...
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Mahsa has published in the “Scientific Reports”

Mahsa Mofidi has reported part of her PhD results in the journal of "Scientific Reports". The paper with the title ...
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Group Seminars

DateTimeTitleSpeakerNotes
08/05/202115:30
Journal Club: Liquid-induced topological transformations of cellular microstructures
Ali Farnudi
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
01/05/202115:30
Theoretical Investigation of Phase Behavior of Confined Lyotropic Liquid Crystals Between Two Walls
Sakineh Mizani
Department of Physics
Shahid Chamran University
Ahvaz, Iran
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
24/04/202115:30cancelled
17/04/202115:30
Computational Membrane Remodeling in Soft Matter and Biophysics
Amirhoushang Bahrami
Living matter and biophysics,
Bilkent University
Ankara, Turkey
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
10/04/202115:30
Computing Alchemical Free Energy Differences
Najla Hosseini
Institute for Nanoscience and Nanotechnology
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
03/04/202115:30cancelled
27/03/202115:30Holiday
20/03/202115:30Holiday
13/03/202115:30
Evolutionary dynamics on network structures
Kamran Kaveh
Dartmouth College, USA
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
06/03/202115:30cancelled
27/02/202115:30
Molecular simulation of stationary phase of chromatographic columns
Elham Aghaee
Drug Design in Silico Lab
Faculty of Chemistry University of Tehran
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
20/02/202115:30
High-Throughput Structure Determination Using Serial Electron Diffraction Method
Ehsan Nikbin
Department of Materials Science and Engineering
University of Toronto
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
13/02/202115:30
No time to learn parallel programming. Now what?
Ali Farnudi
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
06/02/202115:30
Recent Studies on the Moran Model in the
Evolutionary Dynamics
Hossein Nemati
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
30/01/202115:30
Journal Club: Buckling transitions and soft-phase invasion of two-component icosahedral shells
Sajad Sadeghizadeh
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
23/01/202115:30
The Effect of Thyroid Hormone in the Viscoelastic Behavior of Red Blood Cell using Optical Tweezers
Shaqayeq Laktarash
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
16/01/202115:30
Analysis and simulation of cell migration using VCM software
Sajad Sadeghizadeh
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
09/01/202115:30
Emergence of collective changes in active matter from
fluctuations of individual agents
Ali Tahaei
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
02/01/202115:30
In silico exploration of novel protease inhibitors against coronavirus 2019
(COVID-19)
Elham Aghaee
Drug Design in Silico Lab Department of Chemistry
University of Tehran
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
26/12/202015:30
Elucidating the Roles of Interleukin I Receptor type II (lL-1Rll) in the Regulation of Human Immune System, Atomistic Molecular Dynamics simulations
Narges Jamshidi
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
19/12/202015:30
Molecular Dynamics Simulation of Nanocar Motion on Carbon Structures
S. Mahsa Mofidi
Institute for Nanoscience and Nanotechnology
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/12/202015:30
Mathematical model of plasma-therapy effect on bacterial growth focusing on glycolysis pathway
Samira Ranjbar
Department of Physics
Arak University and PLASMANT Group of University of Antwerp, Belgium
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
05/12/202015:30Cancelled
28/11/202015:30
Conformational transition of SARS-CoV-2 RBD protein from the down state to the up state
Hoda Taeb
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
21/11/202015:30
A molecular dynamics approach to study the thermal conductivity of amyloid beta in organic surface
Neda Rafieiolhosseini
Institute for Research in Fundamental Sciences (IPM) School of Nano Science
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
14/11/202015:30
Statistical Mechanics of Circular DNAs
Zahra Ahmadian
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
07/11/202015:30
Information theoretic measures of tactile decisions in the rat somatosensory cortex
Mohammadreza Soltanipour
International School for Advanced Studies (SISSA) Trieste, Italy
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
31/10/202015:30
A Study of Membrane Fluctuations Using the Virtual Cell Model
Ali Farnudi
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
24/10/202018:30
Engineering collective behavior in stem cell-driven tissues
Tiam Heydari

School of Biomedical Engineering
University of British Columbia
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
17/10/202015:30Holiday
10/10/202015:30
Social distancing in pedestrian dynamics and its effect on disease spreading
Alireza Hashemi
Sina Sajjadi

Physics Department
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
03/10/202015:30
Reconciliation of controversial death pattern of starved cells
Hamid Seyed-Allaei

Technical University of Munich, Germany
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
26/09/202015:30Cancelled
19/09/202015:30
A review of Surface Rolling of Molecular Machines and Their Potential Application Investigation
Mehran Vaezi

Institute for Nanoscience and Nanotechnology
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/09/202015:30
Dynamics of polymers with time-dependent activity
Ehsan Irani

The Berlin Institute for Medical Systems Biology (BIMSB)
Max Delbrück Center for Molecular Medicine
Berlin, Germany
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
05/09/202015:30
Genetic Engineering of Biophysics in Plants
Hossein Askari
Life Sciences and Biotechnology
Department
Shahid Beheshti University
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
29/08/202015:30Holiday
22/08/202015:30Cancelled
15/08/202015:30
Computational Models for Active Matter
Abbas Najmabadi
Physics Department
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
08/08/202015:30Holiday
01/08/202015:30
Multi-defect Dynamics in Active Nematics
Alireza Hashemi
Physics Department
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/07/202015:30
Solar Tracking: The Biology and The Pathways
Mobina Toosian
Physics Department
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
18/07/202015:30
Buckling properties of the linear chain of particles
Ali Irannezhad
Trinity College Dublin
Ireland

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/07/202015:30Cancelled
04/07/202015:30
Anomalous diffusion and coherent motion of chromosome domains
Hossein Salari
Laboratory of Biology and Modelling of the Cell
ENS de Lyon
France

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
27/06/202015:30
Mobility of Surface-Moving Nanocars, How Surface Ripples and Chassis Rigidity Contribute
S. Mahsa Mofidi
Department of Physics
Sharif University of Technology

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
20/06/202015:30
Interaction and Dynamics of Topological Defects in Active and Inactive Nematic Environment
Mohammad Reza Ejtehadi
Department of Physics
Sharif University of Technology

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
13/06/202015:30
Polarization of Drug Molecules upon Membrane Translocation
Najla Hosseini
Department of Physics
Sharif University of Technology

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
06/06/202015:30Cancelled
30/05/202015:30
The effect of Plasma radicals on Cystine transportation by xC− antiporter
Maryam Ghasemitarei
Physics Department of Shahid Beheshti University-Iran
PLASMANT group of University of Antwerp-Belgium
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
23/05/202015:30cancelled
16/05/202015:30
Elucidating the roles of lL-1Rll in the regulation of human immune system
Narges Jamshidi
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
09/05/202015:30
A lattice Model for Simulating the Dynamics of Randomly Branching Double-folded Ring Polymers
Elham Ghobadpour
Grenoble Alpes University- France
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
02/05/202015:30
Design and Development of Electrochemical Biosensors Based on Two-dimensional (2D) Materials
Saba Ranjbar
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/04/202015:30
Glycosylated SARS-COV-2 infusion into human cells; biological prospect and structural dynamics
Maryam Azimzadeh Irani
Faculty of Life Sciences and Biotechnology
Shahid Beheshti University
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
18/04/202015:30
Modeling Thermal Fluctuations of a Thin Shell
Ali Farnudi
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/04/202015:30
Journal Club: Thermodynamics and Structure of Poly[n]catenane Melts
Zahra Ahmadian
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
22/02/202015:30cancelled
15/02/202015:30
Mobility of Surface-Moving Nanocars
S. Mahsa Mofidi
Department of Physics
Sharif University of Technology
01/02/202015:30
Lipidated Proteins: Occurrence, Mechanisms, Biological Functions, and Enabling Technologies
Shadi Rahnama
Department of Physics
Sharif University of Technology
25/01/202015:30
How do Sunflowers Follow the Sun?
Mobina Toosian
Department of Physics
Sharif University of Technology
18/01/202015:30@numba.jit()
The MAGIC SPELL
Mohammad Fazelzadeh
Department of Physics
Sharif University of Technology
04/01/202015:30Collective Nonparametric Density and Spectral Density Estimation with
Applications in Bioinformatics
Mehdi Maadooliat
Marquette University – USA
28/12/201915:30Force density relation in mesenchymal cell motility
Setareh Dolati
21/12/201916:45A study on the process of passive uptake of nanoparticles by coarse-grained MD simulation
Hoda SHirzad
Department of Physics, Sharif University of Technology
21/12/201915:30Putting the mitotic spindle in its placeEhssan Nazockdast
University of North California
14/12/201918:30Studying the wisdom of the crowd through large-scale experiment & statistical simulations
Mahdi Nasiri
Department of Physics, Sharif University of Technology
Master thesis defense
Room 626, 6th floor of the Physics Department
14/12/201915:30Thermodynamically consistent treatment of the dynamics of the endocytic machinery
Fowad Motahari
Physics Department, Washington University in St. Louis
30/11/201915:30Molecular Dynamics Simulation of Nanocar Motion on Carbon Structures
Mahsa Mofidi
Institute for Nanosciences and Nanotechnology Sharif University of Technology
cancelled
26/10/201915:30Analysis and simulation of cell migration using VCM software
Sajjad Sadeghizadeh
Department of Physics, Sharif University of Technology
05/10/201915:30Mobility induced phases in self-propelled active matter
Ali Tahaei
Department of Physics, Sharif University of Technology
22/09/201915Temporal Correlations on Co-infection
Sina Sajjadi
Department of Physics, Sharif University of Technology
Master thesis defense
13/08/201915:30Dynamics of active Nematics
Mohammad Fazelzadeh
Department of Physics, Sharif University of Technology
Master thesis defense
10/08/201915:30Statistical mechanics of poly[n] catenens
Zahra Ahmadian
Physics department
Sharif University of Technology
27/07/201915:30Interactions of Azurin with Nanosheets for Medical Applications Maryam Atabay
Sharif University of Technology, Institute of Water and Energy
12/06/201915:30The guanidinium binding role in the single loop conformational dynamics and interaction between two loops of guanidine-II riboswitch Anahita Khammari
Tarbiat Modares University, Biophysics Department
08/006/201915:30Overview of chapter 6 of the book 'Nuclear Architecture and Dynamics' titled : A Polymer Physics View on Universal and Sequence- Specific Aspects of Chromosome Folding. Published 2018.
Link to the chapter
Ali Farnudi
Department of Physics, Sharif University of Technology
The authors of this chapter are Daniel Jost (Universite ́ Grenoble Alpes), Angelo Rosa (SISSA), Ce ́dric Vaillant (Universite ́ Claude Bernard Lyon),
and Ralf Everaers (ENS-Lyon).

The chapter reviews physical models that try to explain chromatin foldings and structure resulting in topologically assigned domains inside the nucleus.
01/06/201915:30Dynamics of active Nematics Mohammad Fazelzadeh
Department of Physics, Sharif University of Technology
25/05/201915:30ApoptosisNarges Jamshidi
Department of Physics, Sharif University of Technology
04/05/201915:30Dynamics of active filaments in porous mediaElham Mokhtari
University of Göttingen
20/04/201915:30GAG Positioning on IL-1RI; a Mechanism Regulated by Dual Effect of GlycosylationMaryam Azimzadeh Irani
Department of Physics, Sharif University of Technology
13/04/201915:30A brief review of some membrane shaping mechanismsHoda Shirzad
Department of Physics, Sharif University of Technology
06/04/201915:30Physics of information sharing in prosocial behaviorsMahdi Nasiri
Department of Physics, Sharif University of Technology
02/03/201915:30Self-assembly of protein nano-cages inside vesiclesShadi Rahnama
Department of Physics, Sharif University of Technology
01/19/201915:30Mechanistic Understanding of the Interactions of Nanoparticles and α-synucleinNajla Hosseini
Department of Physics, Sharif University of Technology
01/05/201915:30Auditory event-related fields emerging from the network structure of the auditory cortexAida Hajizadeh
Leibniz Institute for Neurobiology, Magdeburg, Germany
01/05/201913:30Chromatin arrangement within the cell nucleusAli Farnudi
Department of Physics, Sharif University of Technology
12/01/201815:30Studying Coupled Dynamics on Temporal Networks Sina Sajjadi
Department of Physics, Sharif University of Technology
10/20/201815:30GAG Positioning on IL-1RI; a Mechanism Regulated by Dual Effects of Surface Charge and Glycosylation Maryam Azimzadeh Irani
Department of Physics, Sharif University of Technology
10/13/201815:30Structural and Electrical Properties of Confined Water Iman Ahmadabadi
Department of Physics, Sharif University of Technology
10/06/201815:30Theory and applications of acoustophoresis phenomenon in microchannelsElnaz Attar Jannesar
Department of Physics, K.N. Toosi University of Technology
09/29/201816:25Microscopy as a Tool to Unveil Intracellular
Super-Resolved
Structure in Biological Systems
Nafiseh Rafiei
Institute of Biomaterials and Biomedical Engineering
University of Toronto
09/29/201815:30To be in equilibrium, or not to be, that is the questionMaziar Heidari
Max Planck Institute for Polymer Research, Mainz, Germany
09/22/201816:25Inter-chromosomal hubs and disruption of chromatin organization in mouse model of Autism Spectrum Disorder (ASD)-linked 16p11.2 CNVEhsan Irani
Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular
Medicine in the Helmholtz Association, Berlin, Germany
09/22/201815:30Discontinuous shear-thinning in adhesive dispersionsEhsan Irani
Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular
Medicine in the Helmholtz Association, Berlin, Germany
09/15/201815:30Defects structure in nematic shell with Oblate ellipsoidal coreMohammad Hossein Jamshidi
Sharif University of Technology
Master's thesis defense
09/08/201815:30MDAS: A new algorithm for equilibration of dense fluidsArman Fathizadeh
The University of Texas at Austin
09/01/201815:30Computational Study of Structure and Function of Calcium Channels and Ion BarriersAzadeh Alavizargar
Institute for Research in Fundamental Sciences (IPM)
08/18/201815:30Defect dynamics in active nematicsMohammad Fazelzadeh
Sharif University of Technology
08/04/201815:30Role of Glycosylation in Developing Anti-cancer TherapeuticsMaryam Azimzadeh Irani
Nanyang Technological University
06/09/201815:30A short report of the research activity during my visit from Abdus Salam International Centre for Theoretical PhysicsNeda Rafiee
Institute for Research in Fundamental Sciences (IPM)
06/02/201815:30Some interesting studies about RNAAnahita khammari
Tarbiat Modares University
05/26/201815:30--no seminar
05/19/201815:30Hydrodynamics FluctuationsMasoud Mohammadi
Sharif University of Technology
05/12/201815:30From the Slipping to the FoldingAli Irannezhad & Fatemeh Zahraei
Qom University
05/05/201815:30Molecular Rheology: How the Force Balance Gives a Constitutive EquationAbbas Sheikh
Amirkabir University of Technology
04/28/201815:30Self-assembly of Supramolecular Chiral Structures: Molecular Dynamics SimulationsAlireza Dastan
Sheffield Hallam University