Recent News

Anahita’s paper on Scientific Reports

Anahita has reported her PhD project results on the paper, "The hot sites of α‑synuclein in amyloid fibril formation", appeared ...
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Zahra published on Soft Matter Journal

Zahra's new paper, "Effects of topological constraints on linked ring polymers in solvents of varying quality", appears on Soft Matter ...
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Hoda Shirzad and Mahdi Nasiri defended their MSc theses successfully

Hoda’s work was focused on the simulation of nano-particle uptake to the cell and Mahdi explored the wisdom of the ...
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Group Seminars

DateTimeTitleSpeakerNotes
17/10/202015:30Holiday
10/10/202015:30
Social distancing in pedestrian dynamics and its effect on disease spreading
Alireza Hashemi
Sina Sajjadi

Physics Department
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
03/10/202015:30
Reconciliation of controversial death pattern of starved cells
Hamid Seyed-Allaei

Technical University of Munich, Germany
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
26/09/202015:30Cancelled
19/09/202015:30
A review of Surface Rolling of Molecular Machines and Their Potential Application Investigation
Mehran Vaezi

Institute for Nanoscience and Nanotechnology
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/09/202015:30
Dynamics of polymers with time-dependent activity
Ehsan Irani

The Berlin Institute for Medical Systems Biology (BIMSB)
Max Delbrück Center for Molecular Medicine
Berlin, Germany
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
05/09/202015:30
Genetic Engineering of Biophysics in Plants
Hossein Askari
Life Sciences and Biotechnology
Department
Shahid Beheshti University
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
29/08/202015:30Holiday
22/08/202015:30Cancelled
15/08/202015:30
Computational Models for Active Matter
Abbas Najmabadi
Physics Department
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
08/08/202015:30Holiday
01/08/202015:30
Multi-defect Dynamics in Active Nematics
Alireza Hashemi
Physics Department
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/07/202015:30
Solar Tracking: The Biology and The Pathways
Mobina Toosian
Physics Department
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
18/07/202015:30
Buckling properties of the linear chain of particles
Ali Irannezhad
Trinity College Dublin
Ireland

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/07/202015:30Cancelled
04/07/202015:30
Anomalous diffusion and coherent motion of chromosome domains
Hossein Salari
Laboratory of Biology and Modelling of the Cell
ENS de Lyon
France

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
27/06/202015:30
Mobility of Surface-Moving Nanocars, How Surface Ripples and Chassis Rigidity Contribute
S. Mahsa Mofidi
Department of Physics
Sharif University of Technology

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
20/06/202015:30
Interaction and Dynamics of Topological Defects in Active and Inactive Nematic Environment
Mohammad Reza Ejtehadi
Department of Physics
Sharif University of Technology

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
13/06/202015:30
Polarization of Drug Molecules upon Membrane Translocation
Najla Hosseini
Department of Physics
Sharif University of Technology

Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
06/06/202015:30Cancelled
30/05/202015:30
The effect of Plasma radicals on Cystine transportation by xC− antiporter
Maryam Ghasemitarei
Physics Department of Shahid Beheshti University-Iran
PLASMANT group of University of Antwerp-Belgium
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
23/05/202015:30cancelled
16/05/202015:30
Elucidating the roles of lL-1Rll in the regulation of human immune system
Narges Jamshidi
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
09/05/202015:30
A lattice Model for Simulating the Dynamics of Randomly Branching Double-folded Ring Polymers
Elham Ghobadpour
Grenoble Alpes University- France
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
02/05/202015:30
Design and Development of Electrochemical Biosensors Based on Two-dimensional (2D) Materials
Saba Ranjbar
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/04/202015:30
Glycosylated SARS-COV-2 infusion into human cells; biological prospect and structural dynamics
Maryam Azimzadeh Irani
Faculty of Life Sciences and Biotechnology
Shahid Beheshti University
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
18/04/202015:30
Modeling Thermal Fluctuations of a Thin Shell
Ali Farnudi
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/04/202015:30
Journal Club: Thermodynamics and Structure of Poly[n]catenane Melts
Zahra Ahmadian
Department of Physics
Sharif University of Technology
Virtual meeting at:

https://vclass.ecourse.sharif.edu/ch/ejtehadi
22/02/202015:30cancelled
15/02/202015:30
Mobility of Surface-Moving Nanocars
S. Mahsa Mofidi
Department of Physics
Sharif University of Technology
01/02/202015:30
Lipidated Proteins: Occurrence, Mechanisms, Biological Functions, and Enabling Technologies
Shadi Rahnama
Department of Physics
Sharif University of Technology
25/01/202015:30
How do Sunflowers Follow the Sun?
Mobina Toosian
Department of Physics
Sharif University of Technology
18/01/202015:30@numba.jit()
The MAGIC SPELL
Mohammad Fazelzadeh
Department of Physics
Sharif University of Technology
04/01/202015:30Collective Nonparametric Density and Spectral Density Estimation with
Applications in Bioinformatics
Mehdi Maadooliat
Marquette University – USA
28/12/201915:30Force density relation in mesenchymal cell motility
Setareh Dolati
21/12/201916:45A study on the process of passive uptake of nanoparticles by coarse-grained MD simulation
Hoda SHirzad
Department of Physics, Sharif University of Technology
21/12/201915:30Putting the mitotic spindle in its placeEhssan Nazockdast
University of North California
14/12/201918:30Studying the wisdom of the crowd through large-scale experiment & statistical simulations
Mahdi Nasiri
Department of Physics, Sharif University of Technology
Master thesis defense
Room 626, 6th floor of the Physics Department
14/12/201915:30Thermodynamically consistent treatment of the dynamics of the endocytic machinery
Fowad Motahari
Physics Department, Washington University in St. Louis
30/11/201915:30Molecular Dynamics Simulation of Nanocar Motion on Carbon Structures
Mahsa Mofidi
Institute for Nanosciences and Nanotechnology Sharif University of Technology
cancelled
26/10/201915:30Analysis and simulation of cell migration using VCM software
Sajjad Sadeghizadeh
Department of Physics, Sharif University of Technology
05/10/201915:30Mobility induced phases in self-propelled active matter
Ali Tahaei
Department of Physics, Sharif University of Technology
22/09/201915Temporal Correlations on Co-infection
Sina Sajjadi
Department of Physics, Sharif University of Technology
Master thesis defense
13/08/201915:30Dynamics of active Nematics
Mohammad Fazelzadeh
Department of Physics, Sharif University of Technology
Master thesis defense
10/08/201915:30Statistical mechanics of poly[n] catenens
Zahra Ahmadian
Physics department
Sharif University of Technology
27/07/201915:30Interactions of Azurin with Nanosheets for Medical Applications Maryam Atabay
Sharif University of Technology, Institute of Water and Energy
12/06/201915:30The guanidinium binding role in the single loop conformational dynamics and interaction between two loops of guanidine-II riboswitch Anahita Khammari
Tarbiat Modares University, Biophysics Department
08/006/201915:30Overview of chapter 6 of the book 'Nuclear Architecture and Dynamics' titled : A Polymer Physics View on Universal and Sequence- Specific Aspects of Chromosome Folding. Published 2018.
Link to the chapter
Ali Farnudi
Department of Physics, Sharif University of Technology
The authors of this chapter are Daniel Jost (Universite ́ Grenoble Alpes), Angelo Rosa (SISSA), Ce ́dric Vaillant (Universite ́ Claude Bernard Lyon),
and Ralf Everaers (ENS-Lyon).

The chapter reviews physical models that try to explain chromatin foldings and structure resulting in topologically assigned domains inside the nucleus.
01/06/201915:30Dynamics of active Nematics Mohammad Fazelzadeh
Department of Physics, Sharif University of Technology
25/05/201915:30ApoptosisNarges Jamshidi
Department of Physics, Sharif University of Technology
04/05/201915:30Dynamics of active filaments in porous mediaElham Mokhtari
University of Göttingen
20/04/201915:30GAG Positioning on IL-1RI; a Mechanism Regulated by Dual Effect of GlycosylationMaryam Azimzadeh Irani
Department of Physics, Sharif University of Technology
13/04/201915:30A brief review of some membrane shaping mechanismsHoda Shirzad
Department of Physics, Sharif University of Technology
06/04/201915:30Physics of information sharing in prosocial behaviorsMahdi Nasiri
Department of Physics, Sharif University of Technology
02/03/201915:30Self-assembly of protein nano-cages inside vesiclesShadi Rahnama
Department of Physics, Sharif University of Technology
01/19/201915:30Mechanistic Understanding of the Interactions of Nanoparticles and α-synucleinNajla Hosseini
Department of Physics, Sharif University of Technology
01/05/201915:30Auditory event-related fields emerging from the network structure of the auditory cortexAida Hajizadeh
Leibniz Institute for Neurobiology, Magdeburg, Germany
01/05/201913:30Chromatin arrangement within the cell nucleusAli Farnudi
Department of Physics, Sharif University of Technology
12/01/201815:30Studying Coupled Dynamics on Temporal Networks Sina Sajjadi
Department of Physics, Sharif University of Technology
10/20/201815:30GAG Positioning on IL-1RI; a Mechanism Regulated by Dual Effects of Surface Charge and Glycosylation Maryam Azimzadeh Irani
Department of Physics, Sharif University of Technology
10/13/201815:30Structural and Electrical Properties of Confined Water Iman Ahmadabadi
Department of Physics, Sharif University of Technology
10/06/201815:30Theory and applications of acoustophoresis phenomenon in microchannelsElnaz Attar Jannesar
Department of Physics, K.N. Toosi University of Technology
09/29/201816:25Microscopy as a Tool to Unveil Intracellular
Super-Resolved
Structure in Biological Systems
Nafiseh Rafiei
Institute of Biomaterials and Biomedical Engineering
University of Toronto
09/29/201815:30To be in equilibrium, or not to be, that is the questionMaziar Heidari
Max Planck Institute for Polymer Research, Mainz, Germany
09/22/201816:25Inter-chromosomal hubs and disruption of chromatin organization in mouse model of Autism Spectrum Disorder (ASD)-linked 16p11.2 CNVEhsan Irani
Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular
Medicine in the Helmholtz Association, Berlin, Germany
09/22/201815:30Discontinuous shear-thinning in adhesive dispersionsEhsan Irani
Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular
Medicine in the Helmholtz Association, Berlin, Germany
09/15/201815:30Defects structure in nematic shell with Oblate ellipsoidal coreMohammad Hossein Jamshidi
Sharif University of Technology
Master's thesis defense
09/08/201815:30MDAS: A new algorithm for equilibration of dense fluidsArman Fathizadeh
The University of Texas at Austin
09/01/201815:30Computational Study of Structure and Function of Calcium Channels and Ion BarriersAzadeh Alavizargar
Institute for Research in Fundamental Sciences (IPM)
08/18/201815:30Defect dynamics in active nematicsMohammad Fazelzadeh
Sharif University of Technology
08/04/201815:30Role of Glycosylation in Developing Anti-cancer TherapeuticsMaryam Azimzadeh Irani
Nanyang Technological University
06/09/201815:30A short report of the research activity during my visit from Abdus Salam International Centre for Theoretical PhysicsNeda Rafiee
Institute for Research in Fundamental Sciences (IPM)
06/02/201815:30Some interesting studies about RNAAnahita khammari
Tarbiat Modares University
05/26/201815:30--no seminar
05/19/201815:30Hydrodynamics FluctuationsMasoud Mohammadi
Sharif University of Technology
05/12/201815:30From the Slipping to the FoldingAli Irannezhad & Fatemeh Zahraei
Qom University
05/05/201815:30Molecular Rheology: How the Force Balance Gives a Constitutive EquationAbbas Sheikh
Amirkabir University of Technology
04/28/201815:30Self-assembly of Supramolecular Chiral Structures: Molecular Dynamics SimulationsAlireza Dastan
Sheffield Hallam University