Soft Condensed Matter Group

Date	Time	Title	Speaker	Notes
24/06/2023	15:30	Jurnal Club: “Adhesion of Chlamydomonas microalgae to surfaces is switchable by light” Link: https://www.nature.com/articles/nphys4258	Nafiseh Khanahmadi Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
27/05/2023	15:30	Article Review: “Reactive and non-reactive molecular dynamics simulations of plasma-biomolecule Interactions for a better insight into plasma medicine” (Part two)	Maryam Ghasemi- Tayyebeh Ghorbi Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
20/05/2023	15:30	Article Review: “Reactive and non-reactive molecular dynamics simulations of plasma-biomolecule Interactions for a better insight into plasma medicine”	Maryam Ghasemi- Tayyebeh Ghorbi Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
13/05/2023	15:30	Introduction and application of next-generation sequencing methods in biology	Mahsa Hatami Shahid Beheshti University, Geniran	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
06/05/2023	15:30	Simulation of swimming at low Reynolds number with start model	Mohammad Javad Nouhi Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
29/04/2023	15:30	Journal club: “Taxis of cargo-carrying microswimmers in traveling activity waves”	Mohammad Javad Nouhi Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
15/04/2023	15:30	Multi-scale polymer model of bacterial chromosomes	Elham Ghobadpour Centre National de la Recherche Scientifique (CNRS) Centre Blaise Pascal de l’ENS de Lyon, Lyon, France	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
08/04/2023	15:30	Journal Club: "Glass Formation in Mechanically Interlocked Ring Polymers: The Role of Induced Chain Stiffness"	Reyhaneh Farimani Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/03/2023	15:30	Revealing hidden neuronal microcircuits from correlation among spiking neurons: A statistical physics approach	Safura Rashid Shomali IPM	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
04/03/2023	15:30	Dynamics of Calcium Chloride Aqueous Solutions in Newton Black Films: A Molecular Dynamics Study”	Nahid P.Khiabani Tehran University	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/02/2023	15:30	Journal Club: “Topology-Sensitive Microfluidic Filter for Polymers of Varying Stiffness”	Mahtab Taghavi Nejad Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
28/01/2023	15:30	Computing Absolute Binding Affinities by Streamlined Alchemical Free Energy Perturbation (SAFEP) Method (Part Two)	Mina Ebrahimi Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
21/01/2023	15:30	Computing Absolute Binding Affinities by Streamlined Alchemical Free Energy Perturbation (SAFEP) Method	Mina Ebrahimi Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
14/01/2023	15:30	Tuning the self-organization of confined active particles by the steepness of the trap	Mohammad Samsuzzaman Savitribai Phule Pune University	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
07/01/2023	15:30	Percolation transition in phase separating active fluid	Monika Sanoria Indian Institute of Technology Bombay	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
24/12/2022	15:30	Journal Club: Circular Polycatenanes: Supramolecular Structures with Topologically Tunable Properties	Reyhaneh Farimani Sharif University of Technology	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
17/12/2022	15:30	Microorganisms motility in distinct micro environment	Narges Jamshidi Wuerzburg University	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
19/11/2022	15:30	In silico study of H2O2 transmission through the hVDAC1 protein channel: Towards understanding the anticancer capacity of cold atmospheric plasma	Mahsa Rezaei Shahid Beheshti University	Room 512, Physics faculty, Sharif University of Technology https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/11/2022	15:30	Soft meshes for soft matter: A Molecular Dynamics approach to simulating continuum models of fluid bilayer vesicles	Ali Farnudi Sharif University of technology	Room 512, Physics faculty, Sharif University of Technology
05/11/2022	15:30	Linked rings in shear flow	Reyhaneh Farimani Sharif University of technology	Room 512, Physics faculty, Sharif University of Technology
01/10/2022	15:30	Hands-on session: cancer cell model by PhysiCell	Mobina Tousian Sharif University of technology	Room 512, Physics faculty, Sharif University of Technology
10/09/2022	15:30	Mammalian sperm navigation within the female reproductive tract	Meisam Zaferani Princeton University	Room 512, Physics faculty, Sharif University of Technology
27/08/2022	15:30	Modeling microscopic swimmers at low Reynolds number	Mohammad javad Nouhi Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/07/2022	15:30	Fluid membrane triangulation with dynamic area redistribution	Ali Farnudi École Normale Supérieure de Lyon	https://vclass.ecourse.sharif.edu/ch/ejtehadi
04/07/2022	15:30	Mechanics, Dynamics and Rheology of Active Suspensions in Viscoelastic Media	Akash Choudhary TU Berlin	https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/06/2022	15:30	Electrostatic Free Energy Computations for Solutions and Proteins	Mina Ebrahimi Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
18/06/2022	15:30	On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient	Melika Gorgi Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/06/2022	15:30	Stationary Non-equilibrium Dynamics of Poly[2]catenane in Shear Flow	Reyhaneh Farimani Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
21/05/2022	15:30	The hydrodynamics of swimming microorganisms	Mohammad Javad Nouhi Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
14/05/2022	15:30	Enhanced Function of Flexible Bioactive Supramolecular in Spinal	Mina Ebrahimi Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
30/04/2022	15:30	Role of cholesterol in the chemoresistance cancer cell and Improving free energy methods	Najla Hosseini Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
16/04/2022	15:30			cancelled
09/04/2022	15:30	Meet rare events in molecular dynamics (following last session)	Reza Ejtehadi Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
02/04/2022	15:30			Persian New Year Holidays (Nowruz)
26/03/2022	15:30			Persian New Year Holidays (Nowruz)
19/03/2022	15:30			Persian New Year Holidays (Nowruz)
12/03/2022	15:30	Meet rare events in molecular dynamics	Reza Ejtehadi Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
05/03/2022	15:30	Effect of environmental interactions on evolutionary dynamics in graph structures	Hossein Nemati Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
26/02/2022	15:30	Computational model to predict protein binding sites of a luminescent ligand	Neda Rafieiolhosseini University of Duisburg-Essen, Germany	https://vclass.ecourse.sharif.edu/ch/ejtehadi
19/02/2022	15:30	Simulating wet active polymers by multiparticle collision dynamics	Reihaneh Farimani Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/02/2022	15:30	Predicting Absolute Binding Affinity Using Streamlined Alchemical Free Energy Calculation	Mina Ebrahimi University of Tehran, Institut de Biologie Physico-Chimique in Paris	https://vclass.ecourse.sharif.edu/ch/ejtehadi
29/1/2022	15:30	ANDOR and beyond: Dynamically switchable logic gates as modules for flexible information processing in biochemical regulatory networks.	MohammadReza Bahadorian Max Planck Institute for Molecular Cell Biology and Genetics (MPI-CBG), Center for Systems Biology Dresden (CSBD)	https://vclass.ecourse.sharif.edu/ch/ejtehadi
22/1/2022	15:30	A model of semantic completion in generative episodic memory (computational neuroscience)	Zahra Fayyaz Ruhr University Bochum	https://vclass.ecourse.sharif.edu/ch/ejtehadi
15/1/2022	15:30	How to parametrize forcefields in coarse-graining approaches (compensation session)	Shadi Rahnama Sharif University of Technology, Nanoscience and Nanotechnology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
8/1/2022	15:30	How to parametrize forcefields in coarse-graining approaches	Shadi Rahnama Sharif University of Technology, Nanoscience and Nanotechnology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
1/1/2022	15:30	Deep Potential Molecular Dynamics: A Scalable Model with Quantum Mechanics Accuracy	Iman Ahmadabadi University of Maryland, College Park.	https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/12/2021	15:30			cancelled
18/12/2021	15:30			cancelled
11/12/2021	15:30			cancelled
04/12/2021	15:30			cancelled
27/11/2021	15:30	Reconstruction of cell membranes using a movie and a ruler	Ali Farnudi Sharif University of Technology, École Normale Supérieure de Lyon.	https://vclass.ecourse.sharif.edu/ch/ejtehadi
20/11/2021	15:30	Effective free energy calculation considering intrinsic and extrinsic factors on the Nano-scale level (following last session)	Najla Hosseini Sharif University of Technology, Lund University.	https://vclass.ecourse.sharif.edu/ch/ejtehadi
13/11/2021	15:30	Effective free energy calculation considering intrinsic and extrinsic factors on the Nano-scale level	Najla Hosseini Sharif University of Technology, Lund University.	https://vclass.ecourse.sharif.edu/ch/ejtehadi
6/11/2021	15:30	A coarse-grain elastic lattice polymer model of bacterial chromosomes	Elham Ghobadpour Université Grenoble Alpes, ENS Lyon.	https://vclass.ecourse.sharif.edu/ch/ejtehadi
30/10/2021	15:30			cancelled
23/10/2021	15:30			cancelled
16/10/2021	15:30		Hossein Nemati Department of Physics Sharif University of Technology
9/10/2021	15:30	Journal Club: A Comparative Mechanical Analysis of Plant and Animal Cells Reveals Convergence across Kingdoms	Mobina Tousian Department of Physics Sharif University of Technology	https://vclass.ecourse.sharif.edu/ch/ejtehadi
2/10/2021	15:30			cancelled
25/09/2021	15:30			cancelled
18/09/2021	15:30			cancelled
11/09/2021	15:30			cancelled
04/09/2021	15:30	Investigation of the molecular mechanism of action of surface acting peptides on biomimetic membranes	Mahdi Shahmiri Department of Medical Nanotechnology, Tehran University of Medical Sciences	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
28/08/2021	15:30			cancelled
21/08/2021	15:30			cancelled
14/08/2021	15:30	Journal Club: Highly accurate protein structure prediction with AlphaFold	Shadi Rahnama Institute for Nanoscience and Nanotechnology Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
07/08/2021	15:30	Journal Club: Dynamics and rheology of ring-linear blend semidilute solutions in extensional flow: Single molecule experiments	Reyhaneh Afghahi Farimani Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
31/07/2021	15:30	Plasma Directly Generated in Liquids as an Innovative Method to Treat Cancer	Parisa Shali Faculty of Engineering and Architecture Ghent University Ghent, Belgium	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
24/07/2021	15:30	Transition from the down state to the up state of RBD protein in SARS-CoV-2	Hoda Taeb Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
17/07/2021	15:30			cancelled
10/07/2021	15:30	Modelling and simulation of (Bio)molecules and nanostructured surfaces	Hesamodin Jami Faculty of Engineering School of Aerospace, Mechanical and Mechatronic Engineering University of Sydney NSW 2006, Australia	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
03/07/2021	15:30			The exam break
26/06/2021	15:30	The second session : Multiscale Force Sensing and Transduction in Biology	Mobina Toosian Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
19/06/2021	15:30	Multiscale Force Sensing and Transduction in Biology	Mobina Toosian Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/06/2021	15:30	Evolutionary graphs: structure and fitness heterogeneity effect	Hossein Nemati Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
05/06/2021	15:30			Holiday
29/05/2021	15:30	Mechanical and non-equilibrium characteristics of the nuclear membrane of stem cells	Sedigheh Ghanbarzadeh Nodehi Institute for Advanced Studies in Basic Sciences Zanjan, Iran	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
22/05/2021	16:30	Particle-Based Simulation Methods in Computational Materials Chemistry; few case studies from gas phase to solid state	Mohammad Alaghemandi Department of Electrical and Computer Engineering and Department of Computer Science, Metropolitan College Boston University Boston, USA	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
15/05/2021	15:30	Proteinous Nanofibrils and Amyloidosis	Dina Morshedi National Institute of Genetic Engineering and Biotechnology Tehran, Iran	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
08/05/2021	15:30	Journal Club: Liquid-induced topological transformations of cellular microstructures	Ali Farnudi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
01/05/2021	15:30	Theoretical Investigation of Phase Behavior of Confined Lyotropic Liquid Crystals Between Two Walls	Sakineh Mizani Department of Physics Shahid Chamran University Ahvaz, Iran	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
24/04/2021	15:30			cancelled
17/04/2021	15:30	Computational Membrane Remodeling in Soft Matter and Biophysics	Amirhoushang Bahrami Living matter and biophysics, Bilkent University Ankara, Turkey	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
10/04/2021	15:30	Computing Alchemical Free Energy Differences	Najla Hosseini Institute for Nanoscience and Nanotechnology Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
03/04/2021	15:30			cancelled
27/03/2021	15:30			Holiday
20/03/2021	15:30			Holiday
13/03/2021	15:30	Evolutionary dynamics on network structures	Kamran Kaveh Dartmouth College, USA	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
06/03/2021	15:30			cancelled
27/02/2021	15:30	Molecular simulation of stationary phase of chromatographic columns	Elham Aghaee Drug Design in Silico Lab Faculty of Chemistry University of Tehran	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
20/02/2021	15:30	High-Throughput Structure Determination Using Serial Electron Diffraction Method	Ehsan Nikbin Department of Materials Science and Engineering University of Toronto	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
13/02/2021	15:30	No time to learn parallel programming. Now what?	Ali Farnudi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
06/02/2021	15:30	Recent Studies on the Moran Model in the Evolutionary Dynamics	Hossein Nemati Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
30/01/2021	15:30	Journal Club: Buckling transitions and soft-phase invasion of two-component icosahedral shells	Sajad Sadeghizadeh Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
23/01/2021	15:30	The Effect of Thyroid Hormone in the Viscoelastic Behavior of Red Blood Cell using Optical Tweezers	Shaqayeq Laktarash Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
16/01/2021	15:30	Analysis and simulation of cell migration using VCM software	Sajad Sadeghizadeh Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
09/01/2021	15:30	Emergence of collective changes in active matter from fluctuations of individual agents	Ali Tahaei Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
02/01/2021	15:30	In silico exploration of novel protease inhibitors against coronavirus 2019 (COVID-19)	Elham Aghaee Drug Design in Silico Lab Department of Chemistry University of Tehran	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
26/12/2020	15:30	Elucidating the Roles of Interleukin I Receptor type II (lL-1Rll) in the Regulation of Human Immune System, Atomistic Molecular Dynamics simulations	Narges Jamshidi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
19/12/2020	15:30	Molecular Dynamics Simulation of Nanocar Motion on Carbon Structures	S. Mahsa Mofidi Institute for Nanoscience and Nanotechnology Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/12/2020	15:30	Mathematical model of plasma-therapy effect on bacterial growth focusing on glycolysis pathway	Samira Ranjbar Department of Physics Arak University and PLASMANT Group of University of Antwerp, Belgium	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
05/12/2020	15:30			Cancelled
28/11/2020	15:30	Conformational transition of SARS-CoV-2 RBD protein from the down state to the up state	Hoda Taeb Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
21/11/2020	15:30	A molecular dynamics approach to study the thermal conductivity of amyloid beta in organic surface	Neda Rafieiolhosseini Institute for Research in Fundamental Sciences (IPM) School of Nano Science	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
14/11/2020	15:30	Statistical Mechanics of Circular DNAs	Zahra Ahmadian Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
07/11/2020	15:30	Information theoretic measures of tactile decisions in the rat somatosensory cortex	Mohammadreza Soltanipour International School for Advanced Studies (SISSA) Trieste, Italy	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
31/10/2020	15:30	A Study of Membrane Fluctuations Using the Virtual Cell Model	Ali Farnudi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
24/10/2020	18:30	Engineering collective behavior in stem cell-driven tissues	Tiam Heydari School of Biomedical Engineering University of British Columbia	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
17/10/2020	15:30			Holiday
10/10/2020	15:30	Social distancing in pedestrian dynamics and its effect on disease spreading	Alireza Hashemi Sina Sajjadi Physics Department Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
03/10/2020	15:30	Reconciliation of controversial death pattern of starved cells	Hamid Seyed-Allaei Technical University of Munich, Germany	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
26/09/2020	15:30			Cancelled
19/09/2020	15:30	A review of Surface Rolling of Molecular Machines and Their Potential Application Investigation	Mehran Vaezi Institute for Nanoscience and Nanotechnology Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
12/09/2020	15:30	Dynamics of polymers with time-dependent activity	Ehsan Irani The Berlin Institute for Medical Systems Biology (BIMSB) Max Delbrück Center for Molecular Medicine Berlin, Germany	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
05/09/2020	15:30	Genetic Engineering of Biophysics in Plants	Hossein Askari Life Sciences and Biotechnology Department Shahid Beheshti University	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
29/08/2020	15:30			Holiday
22/08/2020	15:30			Cancelled
15/08/2020	15:30	Computational Models for Active Matter	Abbas Najmabadi Physics Department Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
08/08/2020	15:30			Holiday
01/08/2020	15:30	Multi-defect Dynamics in Active Nematics	Alireza Hashemi Physics Department Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/07/2020	15:30	Solar Tracking: The Biology and The Pathways	Mobina Toosian Physics Department Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
18/07/2020	15:30	Buckling properties of the linear chain of particles	Ali Irannezhad Trinity College Dublin Ireland	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/07/2020	15:30			Cancelled
04/07/2020	15:30	Anomalous diffusion and coherent motion of chromosome domains	Hossein Salari Laboratory of Biology and Modelling of the Cell ENS de Lyon France	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
27/06/2020	15:30	Mobility of Surface-Moving Nanocars, How Surface Ripples and Chassis Rigidity Contribute	S. Mahsa Mofidi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
20/06/2020	15:30	Interaction and Dynamics of Topological Defects in Active and Inactive Nematic Environment	Mohammad Reza Ejtehadi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
13/06/2020	15:30	Polarization of Drug Molecules upon Membrane Translocation	Najla Hosseini Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
06/06/2020	15:30			Cancelled
30/05/2020	15:30	The effect of Plasma radicals on Cystine transportation by xC− antiporter	Maryam Ghasemitarei Physics Department of Shahid Beheshti University-Iran PLASMANT group of University of Antwerp-Belgium	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
23/05/2020	15:30			cancelled
16/05/2020	15:30	Elucidating the roles of lL-1Rll in the regulation of human immune system	Narges Jamshidi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
09/05/2020	15:30	A lattice Model for Simulating the Dynamics of Randomly Branching Double-folded Ring Polymers	Elham Ghobadpour Grenoble Alpes University- France	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
02/05/2020	15:30	Design and Development of Electrochemical Biosensors Based on Two-dimensional (2D) Materials	Saba Ranjbar Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
25/04/2020	15:30	Glycosylated SARS-COV-2 infusion into human cells; biological prospect and structural dynamics	Maryam Azimzadeh Irani Faculty of Life Sciences and Biotechnology Shahid Beheshti University	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
18/04/2020	15:30	Modeling Thermal Fluctuations of a Thin Shell	Ali Farnudi Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
11/04/2020	15:30	Journal Club: Thermodynamics and Structure of Poly[n]catenane Melts	Zahra Ahmadian Department of Physics Sharif University of Technology	Virtual meeting at: https://vclass.ecourse.sharif.edu/ch/ejtehadi
22/02/2020	15:30			cancelled
15/02/2020	15:30	Mobility of Surface-Moving Nanocars	S. Mahsa Mofidi Department of Physics Sharif University of Technology
01/02/2020	15:30	Lipidated Proteins: Occurrence, Mechanisms, Biological Functions, and Enabling Technologies	Shadi Rahnama Department of Physics Sharif University of Technology
25/01/2020	15:30	How do Sunflowers Follow the Sun?	Mobina Toosian Department of Physics Sharif University of Technology
18/01/2020	15:30	@numba.jit() The MAGIC SPELL	Mohammad Fazelzadeh Department of Physics Sharif University of Technology
04/01/2020	15:30	Collective Nonparametric Density and Spectral Density Estimation with Applications in Bioinformatics	Mehdi Maadooliat Marquette University – USA
28/12/2019	15:30	Force density relation in mesenchymal cell motility	Setareh Dolati
21/12/2019	16:45	A study on the process of passive uptake of nanoparticles by coarse-grained MD simulation	Hoda SHirzad Department of Physics, Sharif University of Technology
21/12/2019	15:30	Putting the mitotic spindle in its place	Ehssan Nazockdast University of North California
14/12/2019	18:30	Studying the wisdom of the crowd through large-scale experiment & statistical simulations	Mahdi Nasiri Department of Physics, Sharif University of Technology	Master thesis defense Room 626, 6th floor of the Physics Department
14/12/2019	15:30	Thermodynamically consistent treatment of the dynamics of the endocytic machinery	Fowad Motahari Physics Department, Washington University in St. Louis
30/11/2019	15:30	Molecular Dynamics Simulation of Nanocar Motion on Carbon Structures	Mahsa Mofidi Institute for Nanosciences and Nanotechnology Sharif University of Technology	cancelled
26/10/2019	15:30	Analysis and simulation of cell migration using VCM software	Sajjad Sadeghizadeh Department of Physics, Sharif University of Technology
05/10/2019	15:30	Mobility induced phases in self-propelled active matter	Ali Tahaei Department of Physics, Sharif University of Technology
22/09/2019	15	Temporal Correlations on Co-infection	Sina Sajjadi Department of Physics, Sharif University of Technology	Master thesis defense
13/08/2019	15:30	Dynamics of active Nematics	Mohammad Fazelzadeh Department of Physics, Sharif University of Technology	Master thesis defense
10/08/2019	15:30	Statistical mechanics of poly[n] catenens	Zahra Ahmadian Physics department Sharif University of Technology
27/07/2019	15:30	Interactions of Azurin with Nanosheets for Medical Applications	Maryam Atabay Sharif University of Technology, Institute of Water and Energy
12/06/2019	15:30	The guanidinium binding role in the single loop conformational dynamics and interaction between two loops of guanidine-II riboswitch	Anahita Khammari Tarbiat Modares University, Biophysics Department
08/006/2019	15:30	Overview of chapter 6 of the book 'Nuclear Architecture and Dynamics' titled : A Polymer Physics View on Universal and Sequence- Specific Aspects of Chromosome Folding. Published 2018. Link to the chapter	Ali Farnudi Department of Physics, Sharif University of Technology	The authors of this chapter are Daniel Jost (Universite ́ Grenoble Alpes), Angelo Rosa (SISSA), Ce ́dric Vaillant (Universite ́ Claude Bernard Lyon), and Ralf Everaers (ENS-Lyon). The chapter reviews physical models that try to explain chromatin foldings and structure resulting in topologically assigned domains inside the nucleus.
01/06/2019	15:30	Dynamics of active Nematics	Mohammad Fazelzadeh Department of Physics, Sharif University of Technology
25/05/2019	15:30	Apoptosis	Narges Jamshidi Department of Physics, Sharif University of Technology
04/05/2019	15:30	Dynamics of active filaments in porous media	Elham Mokhtari University of Göttingen
20/04/2019	15:30	GAG Positioning on IL-1RI; a Mechanism Regulated by Dual Effect of Glycosylation	Maryam Azimzadeh Irani Department of Physics, Sharif University of Technology
13/04/2019	15:30	A brief review of some membrane shaping mechanisms	Hoda Shirzad Department of Physics, Sharif University of Technology
06/04/2019	15:30	Physics of information sharing in prosocial behaviors	Mahdi Nasiri Department of Physics, Sharif University of Technology
02/03/2019	15:30	Self-assembly of protein nano-cages inside vesicles	Shadi Rahnama Department of Physics, Sharif University of Technology
01/19/2019	15:30	Mechanistic Understanding of the Interactions of Nanoparticles and α-synuclein	Najla Hosseini Department of Physics, Sharif University of Technology
01/05/2019	15:30	Auditory event-related ﬁelds emerging from the network structure of the auditory cortex	Aida Hajizadeh Leibniz Institute for Neurobiology, Magdeburg, Germany
01/05/2019	13:30	Chromatin arrangement within the cell nucleus	Ali Farnudi Department of Physics, Sharif University of Technology
12/01/2018	15:30	Studying Coupled Dynamics on Temporal Networks	Sina Sajjadi Department of Physics, Sharif University of Technology
10/20/2018	15:30	GAG Positioning on IL-1RI; a Mechanism Regulated by Dual Effects of Surface Charge and Glycosylation	Maryam Azimzadeh Irani Department of Physics, Sharif University of Technology
10/13/2018	15:30	Structural and Electrical Properties of Confined Water	Iman Ahmadabadi Department of Physics, Sharif University of Technology
10/06/2018	15:30	Theory and applications of acoustophoresis phenomenon in microchannels	Elnaz Attar Jannesar Department of Physics, K.N. Toosi University of Technology
09/29/2018	16:25	Microscopy as a Tool to Unveil Intracellular Super-Resolved Structure in Biological Systems	Nafiseh Rafiei Institute of Biomaterials and Biomedical Engineering University of Toronto
09/29/2018	15:30	To be in equilibrium, or not to be, that is the question	Maziar Heidari Max Planck Institute for Polymer Research, Mainz, Germany
09/22/2018	16:25	Inter-chromosomal hubs and disruption of chromatin organization in mouse model of Autism Spectrum Disorder (ASD)-linked 16p11.2 CNV	Ehsan Irani Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany
09/22/2018	15:30	Discontinuous shear-thinning in adhesive dispersions	Ehsan Irani Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany
09/15/2018	15:30	Defects structure in nematic shell with Oblate ellipsoidal core	Mohammad Hossein Jamshidi Sharif University of Technology	Master's thesis defense
09/08/2018	15:30	MDAS: A new algorithm for equilibration of dense fluids	Arman Fathizadeh The University of Texas at Austin
09/01/2018	15:30	Computational Study of Structure and Function of Calcium Channels and Ion Barriers	Azadeh Alavizargar Institute for Research in Fundamental Sciences (IPM)
08/18/2018	15:30	Defect dynamics in active nematics	Mohammad Fazelzadeh Sharif University of Technology
08/04/2018	15:30	Role of Glycosylation in Developing Anti-cancer Therapeutics	Maryam Azimzadeh Irani Nanyang Technological University
06/09/2018	15:30	A short report of the research activity during my visit from Abdus Salam International Centre for Theoretical Physics	Neda Rafiee Institute for Research in Fundamental Sciences (IPM)
06/02/2018	15:30	Some interesting studies about RNA	Anahita khammari Tarbiat Modares University
05/26/2018	15:30	-	-	no seminar
05/19/2018	15:30	Hydrodynamics Fluctuations	Masoud Mohammadi Sharif University of Technology
05/12/2018	15:30	From the Slipping to the Folding	Ali Irannezhad & Fatemeh Zahraei Qom University
05/05/2018	15:30	Molecular Rheology: How the Force Balance Gives a Constitutive Equation	Abbas Sheikh Amirkabir University of Technology
04/28/2018	15:30	Self-assembly of Supramolecular Chiral Structures: Molecular Dynamics Simulations	Alireza Dastan Sheffield Hallam University

Soft Condensed Matter Group

Recent News

Shadi Rahnam and Maryam Azimzadeh have published their results on SARS CoV 2 in the journal of Scientific Reports

Sina has published in PLOS ONE

Elham’s paper in Phys. Rev. E

Group Seminars